It works on multiple platforms, including Windows, Mac OS X, and Linux/Unix systems. There's no user support specifically for Aalto Wiki. Aalto Service Desk servicedesk(a) aalto.fi is where to contact.Īalto Service Desk has forwarded the question to the service providers of Aalto Wiki to check whether the platform handles tools for viewing 3D structures. Jmol is a free, open-source molecule viewer for chemistry and biochemistry. Tried with the secured Jmol link, e.g., but there's no Confluence macro that displays the 3D model. The interactive structure viewing window is opened by selecting the SequenceView PDB entry: entry in the sequence id pop-up menu. Other option is to install JSmol on the site but I don't think that is possible unless there is an official Confluence plugin. A special page is devoted to using Jmol as 3D viewer for CDK based projects: Jmol Cdk Integration. Here is the previous code ported to Jython To see how Spice is integrating Jmol, please have a look here. Setting the wiki to public may work.įor real crystal structures with pdb id (pdb id in place of xxxx): A very good start is the Integration.java out of Jmol SVN. If this is used the models need to be hosted on a public location so the Jmol plugin can find them. However, I could not get the JavaScript commands to work with the wiki platform. The easiest way to add a Jmol viewer would be these instructions because they don't need installations on the wiki. Confluence makes it really hard or impossible to add custom features, such as Jmol viewers.
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